Transcript: lnc-SLC13A4-1:2

Basic information

LNCipedia transcript ID: lnc-SLC13A4-1:2 
LNCipedia gene ID: lnc-SLC13A4-1
Location (hg38): chr7:135708141-135729226
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 578 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000378428.3; AC091736.10-001; OTTHUMT00000340553.1; NONHSAT123528
Alternative gene names: ENSG00000239652.1; AC091736.10; OTTHUMG00000155536.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 98.18% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC13A4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC13A4-1:2
4.0 lnc-SLC13A4-1:2
4.1 lnc-SLC13A4-1:2
5.0 lnc-SLC13A4-1:2
5.1 lnc-C7orf49-12:2
5.2 lnc-SLC13A4-1:2