Transcript: lnc-SLC12A7-5:10

Basic information

LNCipedia transcript ID: lnc-SLC12A7-5:10 
LNCipedia gene ID: lnc-SLC12A7-5
RefSeq ID: NR_109911
Location (hg38): chr5:1173096-1178605
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1802 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109911; NR_109911.1
Alternative gene names: CTD-3080P12.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 60.3446 non-coding 
CPAT coding probability 10.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC12A7-5:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC12A7-5:10
4.0 lnc-SLC12A7-5:10
4.1 lnc-SLC12A7-5:10
5.0 lnc-SLC12A7-5:10
5.1 lnc-IRX2-23:13
5.2 lnc-SLC12A7-5:10