Transcript: lnc-SLC12A7-4:2

Basic information

LNCipedia transcript ID: lnc-SLC12A7-4:2 
LNCipedia gene ID: lnc-SLC12A7-4
Ensembl Gene ID: ENSG00000215246
Ensembl Transcript ID: ENST00000399869
Location (hg38): chr5:987180-997308
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3482 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000399869.1; RP11-43F13.3-001; OTTHUMT00000366445.2; NONHSAT099947
Alternative gene names: ENSG00000215246.4; RP11-43F13.3; OTTHUMG00000161930.2; ENSG00000215246.5; AC116351.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.6639 non-coding 
CPAT coding probability 10.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC12A7-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC12A7-4:2
4.0 lnc-SLC12A7-4:2
4.1 lnc-SLC12A7-4:2
5.0 lnc-SLC12A7-4:2
5.1 lnc-IRX2-29:9
5.2 lnc-SLC12A7-4:2