Transcript: lnc-SLC12A7-1:10

Basic information

LNCipedia transcript ID: lnc-SLC12A7-1:10 
LNCipedia gene ID: lnc-SLC12A7-1
Location (hg38): chr5:1043001-1045290
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1974 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010236; NONHSAT099961
Alternative gene names: XLOC_004700; linc-BRD9-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.7736 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC12A7-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC12A7-1:10
3.1 lnc-SLC12A7-1:10
4.0 lnc-SLC12A7-1:10
4.1 lnc-SLC12A7-1:10
5.0 lnc-SLC12A7-1:10
5.1 lnc-IRX2-27:14
5.2 lnc-SLC12A7-1:10