Transcript: lnc-SLC10A1-1:1

Basic information

LNCipedia transcript ID: lnc-SLC10A1-1:1 
LNCipedia gene ID: lnc-SLC10A1-1
RefSeq ID: NR_029378
Location (hg38): chr14:69766283-69767713
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1431 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT037537; NR_029378; NR_029378.1
Alternative gene names: LOC100289511


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.6179 non-coding 
CPAT coding probability 33.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC10A1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC10A1-1:1
4.0 lnc-SLC10A1-1:1
4.1 lnc-SLC10A1-1:1
5.0 lnc-SLC10A1-1:1
5.1 lnc-ABCD4-64:1
5.2 lnc-SLC10A1-1:1