Transcript: lnc-SIPA1L3-3:20

Basic information

LNCipedia transcript ID: lnc-SIPA1L3-3:20 
LNCipedia gene ID: lnc-SIPA1L3-3
Location (hg38): chr19:37829551-37832160
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2610 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000443870.2
Alternative gene names: ENSG00000229481.2; CTD-2554C21.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -13.1349 non-coding 
CPAT coding probability 6.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIPA1L3-3:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SIPA1L3-1:2
4.1 lnc-SIPA1L3-3:20
5.0 lnc-SIPA1L3-3:20
5.1 lnc-ZNF540-9:2
5.2 lnc-SIPA1L3-3:20