Transcript: lnc-SIK1B-6:1

Basic information

LNCipedia transcript ID: lnc-SIK1B-6:1 
LNCipedia gene ID: lnc-SIK1B-6
Ensembl Gene ID: ENSG00000279687
Ensembl Transcript ID: ENST00000623188
Location (hg38): chr21:5073458-5087867
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 479 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623188.1
Alternative gene names: ENSG00000279687.1; CH507-9B2.8; FP565260.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -35.7561 non-coding 
CPAT coding probability 13.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIK1B-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ICOSLG-4:2
4.1 lnc-ICOSLG-6:6
5.0 lnc-ICOSLG-6:6
5.1 lnc-OLIG1-191:1
5.2 lnc-SIK1B-6:1