Transcript: lnc-SI-5:1

Basic information

LNCipedia transcript ID: lnc-SI-5:1 
LNCipedia gene ID: lnc-SI-5
Location (hg38): chr3:164669762-164786104
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1656 bp
Exons: 10
Sources: Nielsen et al.,2014
Alternative transcript names: l_2521_chr3:164387549-164449856_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.1815 non-coding 
CPAT coding probability 4.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SI-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SI-5:1
4.0 lnc-SI-5:1
4.1 lnc-SI-5:1
5.0 lnc-SI-5:1
5.1 lnc-KPNA4-15:1
5.2 lnc-SI-5:1