Transcript: lnc-SHPRH-6:1

Basic information

LNCipedia transcript ID: lnc-SHPRH-6:1 
LNCipedia gene ID: lnc-SHPRH-6
Location (hg38): chr6:146883023-146893029
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3774 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_3289_chr6:147204158-147214165_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.1362 non-coding 
CPAT coding probability 21.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHPRH-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SHPRH-6:1
4.0 lnc-SHPRH-6:1
4.1 lnc-SHPRH-6:1
5.0 lnc-SHPRH-6:1
5.1 lnc-RAET1G-39:1
5.2 lnc-SHPRH-6:1