Transcript: lnc-SH3D21-9:1

Basic information

LNCipedia transcript ID: lnc-SH3D21-9:1 
LNCipedia gene ID: lnc-SH3D21-9
Location (hg38): chr1:36464506-36465040
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 535 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000113188.1|HBMT00000011859.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -156.9827 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3D21-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AL591845.1-9:1
5.0 lnc-AL591845.1-9:1
5.1 lnc-NCDN-34:1
5.2 lnc-SH3D21-9:1