Transcript: lnc-SH3BGRL-5:6

Basic information

LNCipedia transcript ID: lnc-SH3BGRL-5:6 
LNCipedia gene ID: lnc-SH3BGRL-5
Location (hg38): chrX:80809953-80813782
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3830 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000111728.1|ENCT00000468967.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.3185 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3BGRL-5:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SH3BGRL-5:6
5.0 lnc-SH3BGRL-5:6
5.1 lnc-NHSL2-69:6
5.2 lnc-SH3BGRL-5:6