Transcript: lnc-SH2D4A-2:3

Basic information

LNCipedia transcript ID: lnc-SH2D4A-2:3 
LNCipedia gene ID: lnc-SH2D4A-2
Ensembl Gene ID: ENSG00000254242
Ensembl Transcript ID: ENST00000518324
Location (hg38): chr8:19091733-19115024
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 519 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518324; ENST00000518324.1; RP11-1080G15.2-001; OTTHUMT00000374892.1; NONHSAT125357
Alternative gene names: ENSG00000254242; RP11-1080G15.2; ENSG00000254242.1; OTTHUMG00000163716.1; AC100849.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.3024 non-coding 
CPAT coding probability 12.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH2D4A-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SH2D4A-2:3
3.1 lnc-SH2D4A-2:3
4.0 lnc-SH2D4A-2:3
4.1 lnc-SH2D4A-2:3
5.0 lnc-SH2D4A-2:3
5.1 lnc-SH2D4A-2:3
5.2 lnc-SH2D4A-2:3