Transcript: lnc-SGTB-4:1

Basic information

LNCipedia transcript ID: lnc-SGTB-4:1 
LNCipedia gene ID: lnc-SGTB-4
Location (hg38): chr5:66347762-66440487
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2294 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010941; NONHSAT101789
Alternative gene names: XLOC_004850; linc-SGTB-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.0628 non-coding 
CPAT coding probability 2.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGTB-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SGTB-3:1
3.1 lnc-SGTB-4:1
4.0 lnc-SGTB-4:1
4.1 lnc-SGTB-4:1
5.0 lnc-SGTB-4:1
5.1 lnc-TRIM23-13:1
5.2 lnc-SGTB-4:1