Transcript: lnc-SGMS2-5:2

Basic information

LNCipedia transcript ID: lnc-SGMS2-5:2 
LNCipedia gene ID: lnc-SGMS2-5
Location (hg38): chr4:107720516-107722686
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2012 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000069690.1|MICT00000269207.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.4496 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGMS2-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SGMS2-5:2
5.0 lnc-SGMS2-5:2
5.1 lnc-GAR1-18:2
5.2 lnc-SGMS2-5:2