Transcript: lnc-SGK1-3:20

Basic information

LNCipedia transcript ID: lnc-SGK1-3:20 
LNCipedia gene ID: lnc-SGK1-3
RefSeq ID: NR_125852
Location (hg38): chr6:134429030-134478897
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1188 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125852; NR_125852.1
Alternative gene names: LOC101928231


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.5472 non-coding 
CPAT coding probability 8.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGK1-3:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SGK1-1:6
4.0 lnc-SGK1-1:6
4.1 lnc-SGK1-3:20
5.0 lnc-SGK1-3:20
5.1 lnc-OLIG3-65:20
5.2 lnc-SGK1-3:20