Transcript: lnc-SGIP1-1:1

Basic information

LNCipedia transcript ID: lnc-SGIP1-1:1 
LNCipedia gene ID: lnc-SGIP1-1
Location (hg38): chr1:66775046-66775578
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 360 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000448074.1; RP11-266I14.3-001; OTTHUMT00000025402.1; NONHSAT003766
Alternative gene names: ENSG00000227787.1; RP11-266I14.3; OTTHUMG00000009163.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -209.0413 non-coding 
CPAT coding probability 9.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGIP1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SGIP1-1:1
4.0 lnc-SGIP1-1:1
4.1 lnc-SGIP1-1:1
5.0 lnc-SGIP1-1:1
5.1 lnc-RAVER2-24:1
5.2 lnc-SGIP1-1:1