Transcript: lnc-SGCG-5:6

Basic information

LNCipedia transcript ID: lnc-SGCG-5:6 
LNCipedia gene ID: lnc-SGCG-5
Location (hg38): chr13:22927244-22935107
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 739 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA343:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 60.4954 non-coding 
CPAT coding probability 9.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SGCG-5:6 no no no no

Available literature

  1. Zeng (2016), Analysis of lncRNAs expression in UVB-induced stress responses of melanocytes., J. Dermatol. Sci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SGCG-5:6
4.1 lnc-SGCG-5:6
5.0 lnc-SGCG-5:6
5.1 lnc-GTF3A-92:4
5.2 lnc-SGCG-5:6