Transcript: lnc-SFTPA2-1:6

Basic information

LNCipedia transcript ID: lnc-SFTPA2-1:6 
LNCipedia gene ID: lnc-SFTPA2-1
RefSeq ID: NR_136625
Location (hg38): chr10:79507603-79510982
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 663 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_136625.1
Alternative gene names: LOC729815


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -53.29 non-coding 
CPAT coding probability 4.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SFTPA2-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-VSIR-94:2
5.1 lnc-VSIR-94:2
5.2 lnc-SFTPA2-1:6