Transcript: lnc-SFT2D3-1:3

Basic information

LNCipedia transcript ID: lnc-SFT2D3-1:3 
LNCipedia gene ID: lnc-SFT2D3-1
Location (hg38): chr2:127811258-127813505
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1837 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000044547.1|ENCT00000229429.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.9949 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SFT2D3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SFT2D3-1:3
5.0 lnc-SFT2D3-1:3
5.1 lnc-GPR17-3:1
5.2 lnc-SFT2D3-1:3