Transcript: lnc-SETD1B-2:2

Basic information

LNCipedia transcript ID: lnc-SETD1B-2:2 
LNCipedia gene ID: lnc-SETD1B-2
Ensembl Gene ID: ENSG00000274292
Ensembl Transcript ID: ENST00000613093
Location (hg38): chr12:121800797-121803403
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2607 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613093.1
Alternative gene names: ENSG00000274292.1; RP11-347I19.7; AC084018.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.2215 non-coding 
CPAT coding probability 62.33% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SETD1B-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SETD1B-2:2
4.1 lnc-SETD1B-2:2
5.0 lnc-SETD1B-2:2
5.1 lnc-PSMD9-2:2
5.2 lnc-SETD1B-2:2