Transcript: lnc-SERTAD2-3:6

Basic information

LNCipedia transcript ID: lnc-SERTAD2-3:6 
LNCipedia gene ID: lnc-SERTAD2-3
Location (hg38): chr2:64901306-64909716
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 709 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_1850_chr2:65128439-65136836_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.9569 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERTAD2-3:6 no no no no

Available literature

  1. Martini (2017), lncRNAs as Novel Indicators of Patients' Prognosis in Stage I Epithelial Ovarian Cancer: A Retrospective and Multicentric Study., Clin. Cancer Res.
  2. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAB1A-3:5
4.0 lnc-SERTAD2-3:6
4.1 lnc-SERTAD2-3:6
5.0 lnc-SERTAD2-3:6
5.1 lnc-GKN2-95:5
5.2 lnc-SERTAD2-3:6

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