Transcript: lnc-SERPINB9-1:1

Basic information

LNCipedia transcript ID: lnc-SERPINB9-1:1 
LNCipedia gene ID: lnc-SERPINB9-1
Location (hg38): chr6:2854658-2876510
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1251 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000545177; ENST00000545177.1; RP11-420G6.4-201
Alternative gene names: ENSG00000230438; RP11-420G6.4; ENSG00000230438.3; OTTHUMG00000014127.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.5848 non-coding 
CPAT coding probability 9.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERPINB9-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SERPINB9-1:2
3.1 lnc-SERPINB9-1:1
4.0 lnc-SERPINB9-1:1
4.1 lnc-SERPINB9-1:1
5.0 lnc-SERPINB9-1:1
5.1 lnc-ECI2-97:5
5.2 lnc-SERPINB9-1:1