Transcript: lnc-SERINC5-1:2

Basic information

LNCipedia transcript ID: lnc-SERINC5-1:2 
LNCipedia gene ID: lnc-SERINC5-1
Ensembl Gene ID: ENSG00000249825
Ensembl Transcript ID: ENST00000503007
Location (hg38): chr5:80052374-80082404
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 956 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503007.1; CTD-2201I18.1-002; OTTHUMT00000369630.1; NONHSAT102384; ENST00000503007.5
Alternative gene names: ENSG00000249825.1; CTD-2201I18.1; OTTHUMG00000162569.1; ENSG00000249825.5; AC012636.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.391 non-coding 
CPAT coding probability 18.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERINC5-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERINC5-1:2
4.0 lnc-SERINC5-1:2
4.1 lnc-SERINC5-1:2
5.0 lnc-SERINC5-1:2
5.1 lnc-ANKRD34B-15:3
5.2 lnc-SERINC5-1:2