Transcript: lnc-SERHL2-1:4

Basic information

LNCipedia transcript ID: lnc-SERHL2-1:4 
LNCipedia gene ID: lnc-SERHL2-1
Location (hg38): chr22:42501596-42502653
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 596 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000434218.1; SERHL-004; OTTHUMT00000320529.1; NONHSAT087056
Alternative gene names: ENSG00000172250.10; SERHL; OTTHUMG00000150888.3; ENSG00000172250.14


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 55.6831 non-coding 
CPAT coding probability 6.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SERHL2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERHL2-1:4
4.0 lnc-SERHL2-1:4
4.1 lnc-SERHL2-1:4
5.0 lnc-SERHL2-1:4
5.1 lnc-SMDT1-8:11
5.2 lnc-SERHL2-1:4