Transcript: lnc-SERF1B-1:2

Basic information

LNCipedia transcript ID: lnc-SERF1B-1:2 
LNCipedia gene ID: lnc-SERF1B-1
Location (hg38): chr5:69986951-69997742
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3763 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000513644.1; RP11-974F13.6-002; OTTHUMT00000369091.1; NONHSAT101948
Alternative gene names: ENSG00000250763.1; RP11-974F13.6; OTTHUMG00000162476.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.5657 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERF1B-1:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERF1B-1:2
4.0 lnc-SERF1B-1:2
4.1 lnc-SERF1B-1:2
5.0 lnc-SERF1B-1:2
5.1 lnc-BDP1-22:9
5.2 lnc-SERF1B-1:2