Transcript: lnc-SEPT9-3:11

Basic information

LNCipedia transcript ID: lnc-SEPT9-3:11 
LNCipedia gene ID: lnc-SEPT9-3
Location (hg38): chr17:77546940-77563243
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2452 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000267506.1|ENST00000590398.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 32.1513 non-coding 
CPAT coding probability 5.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEPT9-3:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SEPT9-3:11
5.0 lnc-SEPT9-3:11
5.1 lnc-ZACN-32:4
5.2 lnc-SEPT9-3:11