Transcript: lnc-SENP1-1:1

Basic information

LNCipedia transcript ID: lnc-SENP1-1:1 
LNCipedia gene ID: lnc-SENP1-1
Ensembl Gene ID: ENSG00000276814
Ensembl Transcript ID: ENST00000616571
Location (hg38): chr12:48039784-48040761
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 978 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000616571.1
Alternative gene names: ENSG00000276814.1; RP1-228P16.8; AC004801.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -174.9628 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SENP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SENP1-1:1
4.1 lnc-SENP1-1:1
5.0 lnc-SENP1-1:1
5.1 lnc-HDAC7-8:1
5.2 lnc-SENP1-1:1