Transcript: lnc-SELENOP-1:6

Basic information

LNCipedia transcript ID: lnc-SELENOP-1:6 
LNCipedia gene ID: lnc-SELENOP-1
Location (hg38): chr5:42918363-42918665
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_25285_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.852 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SELENOP-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEPP1-1:3
4.0 lnc-SEPP1-1:3
4.1 lnc-SEPP1-1:3
5.0 lnc-SEPP1-1:3
5.1 lnc-SELENOP-1:3
5.2 lnc-SELENOP-1:6