Transcript: lnc-SEL1L3-1:3

Basic information

LNCipedia transcript ID: lnc-SEL1L3-1:3 
LNCipedia gene ID: lnc-SEL1L3-1
Location (hg38): chr4:25865181-25865801
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 532 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00007730; NONHSAT095861
Alternative gene names: XLOC_003911; linc-SEL1L3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.6706 non-coding 
CPAT coding probability 2.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEL1L3-1:3 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEL1L3-1:3
3.1 lnc-SEL1L3-1:3
4.0 lnc-SEL1L3-1:3
4.1 lnc-SEL1L3-1:3
5.0 lnc-SEL1L3-1:3
5.1 lnc-AFAP1-143:3
5.2 lnc-SEL1L3-1:3