Transcript: lnc-SEL1L3-1:2

Basic information

LNCipedia transcript ID: lnc-SEL1L3-1:2 
LNCipedia gene ID: lnc-SEL1L3-1
Ensembl Gene ID: ENSG00000251009
Ensembl Transcript ID: ENST00000503085
Location (hg38): chr4:25864881-25869550
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 762 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007729; ENST00000503085; ENST00000503085.1; RP13-494C23.1-001; OTTHUMT00000360273.1; NONHSAT095860
Alternative gene names: XLOC_003911; linc-SEL1L3; ENSG00000251009; RP13-494C23.1; ENSG00000251009.2; OTTHUMG00000160332.1; AC133961.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.4305 non-coding 
CPAT coding probability 2.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEL1L3-1:2 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEL1L3-1:2
3.1 lnc-SEL1L3-1:2
4.0 lnc-SEL1L3-1:2
4.1 lnc-SEL1L3-1:2
5.0 lnc-SEL1L3-1:2
5.1 lnc-AFAP1-143:2
5.2 lnc-SEL1L3-1:2