Transcript: lnc-SEL1L-4:1

Basic information

LNCipedia transcript ID: lnc-SEL1L-4:1 
LNCipedia gene ID: lnc-SEL1L-4
Ensembl Gene ID: ENSG00000258683
Ensembl Transcript ID: ENST00000554451
Location (hg38): chr14:82788478-82796221
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 539 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554451; ENST00000554451.1; RP11-11K13.1-001; OTTHUMT00000413243.1; NONHSAT038090
Alternative gene names: ENSG00000258683; RP11-11K13.1; ENSG00000258683.1; OTTHUMG00000171389.1; AL355095.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.193 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEL1L-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEL1L-4:1
3.1 lnc-SEL1L-4:1
4.0 lnc-SEL1L-4:1
4.1 lnc-SEL1L-4:1
5.0 lnc-SEL1L-4:1
5.1 lnc-GALC-68:1
5.2 lnc-SEL1L-4:1