Transcript: lnc-SEC61G-7:3

Basic information

LNCipedia transcript ID: lnc-SEC61G-7:3 
LNCipedia gene ID: lnc-SEC61G-7
Location (hg38): chr7:53380533-53398505
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 305 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00013802
Alternative gene names: XLOC_006444; linc-COBL-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.1003 non-coding 
CPAT coding probability 4.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC61G-7:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEC61G-7:3
3.1 lnc-SEC61G-7:3
4.0 lnc-SEC61G-7:3
4.1 lnc-SEC61G-7:3
5.0 lnc-SEC61G-7:3
5.1 lnc-VOPP1-20:10
5.2 lnc-SEC61G-7:3