Transcript: lnc-SEC61G-14:1

Basic information

LNCipedia transcript ID: lnc-SEC61G-14:1 
LNCipedia gene ID: lnc-SEC61G-14
RefSeq ID: NR_004422
Location (hg38): chr7:54201224-54202421
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1198 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT120646; NR_004422; NR_004422.2
Alternative gene names: PE5L; HPV18E5L; HPVC1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.1501 non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC61G-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC61G-11:1
4.0 HPVC1:1
4.1 HPVC1:1
5.0 HPVC1:1
5.1 lnc-VOPP1-15:1
5.2 lnc-SEC61G-14:1