Transcript: lnc-SEC61B-3:1

Basic information

LNCipedia transcript ID: lnc-SEC61B-3:1 
LNCipedia gene ID: lnc-SEC61B-3
Location (hg38): chr9:99392851-99432421
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1261 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: l_3823_chr9:102155132-102194472_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.986 non-coding 
CPAT coding probability 4.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC61B-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRT8P11-3:1
4.0 lnc-KRT8P11-3:1
4.1 lnc-KRT8P11-3:1
5.0 lnc-KRT8P11-3:1
5.1 lnc-FAM120A-129:1
5.2 lnc-SEC61B-3:1