Transcript: lnc-SDSL-14:2

Basic information

LNCipedia transcript ID: lnc-SDSL-14:2 
LNCipedia gene ID: lnc-SDSL-14
Ensembl Gene ID: ENSG00000257817
Ensembl Transcript ID: ENST00000551875
Location (hg38): chr12:114713811-114767957
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1330 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551875; ENST00000551875.1; RP4-601P9.2-001; OTTHUMT00000404943.1
Alternative gene names: ENSG00000257817; RP4-601P9.2; ENSG00000257817.1; OTTHUMG00000169584.1; AC026765.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.1274 non-coding 
CPAT coding probability 6.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SDSL-14:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-116D17.1.1-10:2
3.1 lnc-RP11-116D17.1.1-11:2
4.0 lnc-RP11-116D17.1.1-11:2
4.1 lnc-RP11-116D17.1.1-11:2
5.0 lnc-RP11-116D17.1.1-11:2
5.1 lnc-PLBD2-15:2
5.2 lnc-SDSL-14:2