Transcript: lnc-SDSL-12:2

Basic information

LNCipedia transcript ID: lnc-SDSL-12:2 
LNCipedia gene ID: lnc-SDSL-12
Location (hg38): chr12:113861218-113867887
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3397 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000010475.1|MICT00000086880.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.0587 non-coding 
CPAT coding probability 11.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SDSL-12:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SDSL-12:2
5.0 lnc-SDSL-12:2
5.1 lnc-PLBD2-12:2
5.2 lnc-SDSL-12:2