Transcript: lnc-SCPEP1-6:1

Basic information

LNCipedia transcript ID: lnc-SCPEP1-6:1 
LNCipedia gene ID: lnc-SCPEP1-6
Location (hg38): chr17:56868947-56869564
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 618 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000576602.1; RP11-670E13.2-001; OTTHUMT00000440607.1; NONHSAT054849
Alternative gene names: ENSG00000262951.1; RP11-670E13.2; OTTHUMG00000178122.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.9191 non-coding 
CPAT coding probability 4.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCPEP1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DGKE-1:1
4.0 lnc-DGKE-1:1
4.1 lnc-DGKE-1:1
5.0 lnc-DGKE-1:1
5.1 lnc-PRR11-41:1
5.2 lnc-SCPEP1-6:1