Transcript: lnc-SCOC-3:1

Basic information

LNCipedia transcript ID: lnc-SCOC-3:1 
LNCipedia gene ID: lnc-SCOC-3
Location (hg38): chr4:140095878-140097980
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1225 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000070347.1|MICT00000272000.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.3146 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCOC-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SCOC-3:1
5.0 lnc-SCOC-3:1
5.1 lnc-ELMOD2-6:1
5.2 lnc-SCOC-3:1