Transcript: lnc-SCNN1B-1:2

Basic information

LNCipedia transcript ID: lnc-SCNN1B-1:2 
LNCipedia gene ID: lnc-SCNN1B-1
Ensembl Gene ID: ENSG00000260136
Ensembl Transcript ID: ENST00000562842
Location (hg38): chr16:23453007-23457606
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 438 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562842.1; CTD-2270L9.4-002; OTTHUMT00000435279.1
Alternative gene names: ENSG00000260136.1; CTD-2270L9.4; OTTHUMG00000177094.1; ENSG00000260136.5; AC008915.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
QDCLSLGSGGWRK 90.9090909090909% sense-2
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.7992 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SCNN1B-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCNN1B-1:2
4.0 lnc-SCNN1B-1:2
4.1 lnc-SCNN1B-1:2
5.0 lnc-SCNN1B-1:2
5.1 lnc-TMC5-65:8
5.2 lnc-SCNN1B-1:2