Transcript: lnc-SCN9A-72:2

Basic information

LNCipedia transcript ID: lnc-SCN9A-72:2 
LNCipedia gene ID: lnc-SCN9A-72
Location (hg38): chr2:166126930-166128006
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 317 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005266; NONHSAT075283
Alternative gene names: XLOC_002380; linc-SCN1A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.0244 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCN9A-72:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCN1A-1:1
3.1 lnc-SCN1A-1:2
4.0 lnc-SCN1A-1:2
4.1 lnc-SCN1A-1:2
5.0 lnc-SCN1A-1:2
5.1 lnc-SCN9A-5:2
5.2 lnc-SCN9A-72:2