Transcript: lnc-SCN8A-2:12

Basic information

LNCipedia transcript ID: lnc-SCN8A-2:12 
LNCipedia gene ID: lnc-SCN8A-2
Ensembl Gene ID: ENSG00000260473
Ensembl Transcript ID: ENST00000637934
Location (hg38): chr12:51815043-51842106
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1195 bp
Exons: 5
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637934.1
Alternative gene names: ENSG00000260473.2; RP11-923I11.4; AC068987.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -43.5603 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCN8A-2:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SCN8A-2:12
5.0 lnc-SCN8A-2:12
5.1 lnc-SCN8A-2:12
5.2 lnc-SCN8A-2:12