Transcript: lnc-SCIMP-1:4

Basic information

LNCipedia transcript ID: lnc-SCIMP-1:4 
LNCipedia gene ID: lnc-SCIMP-1
Location (hg38): chr17:5240016-5241552
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1041 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025537; NONHSAT145202
Alternative gene names: XLOC_012366; linc-C17orf87


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.067 non-coding 
CPAT coding probability 5.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCIMP-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCIMP-1:4
3.1 lnc-SCIMP-1:4
4.0 lnc-SCIMP-1:4
4.1 lnc-SCIMP-1:4
5.0 lnc-SCIMP-1:4
5.1 lnc-PHF23-38:4
5.2 lnc-SCIMP-1:4