Transcript: lnc-SCGB1C2-8:1

Basic information

LNCipedia transcript ID: lnc-SCGB1C2-8:1 
LNCipedia gene ID: lnc-SCGB1C2-8
Location (hg38): chr17:198204-199837
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1498 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025258; NONHSAT144665
Alternative gene names: XLOC_012064; linc-C17orf97-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.1789 non-coding 
CPAT coding probability 46.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SCGB1C2-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C17orf97-2:1
3.1 lnc-C17orf97-8:1
4.0 lnc-C17orf97-8:1
4.1 lnc-C17orf97-8:1
5.0 lnc-C17orf97-8:1
5.1 lnc-RPA1-67:1
5.2 lnc-SCGB1C2-8:1