Transcript: lnc-SCAND1-9:1

Basic information

LNCipedia transcript ID: lnc-SCAND1-9:1 
LNCipedia gene ID: lnc-SCAND1-9
Ensembl Gene ID: ENSG00000277235
Ensembl Transcript ID: ENST00000619647
Location (hg38): chr20:36064243-36064563
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 321 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000619647.1
Alternative gene names: ENSG00000277235.1; RP4-550H1.7; AL035420.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -142.9737 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCAND1-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SCAND1-9:1
4.1 lnc-SCAND1-9:1
5.0 lnc-SCAND1-9:1
5.1 lnc-EIF6-17:1
5.2 lnc-SCAND1-9:1