Transcript: lnc-SCAMP5-1:2

Basic information

LNCipedia transcript ID: lnc-SCAMP5-1:2 
LNCipedia gene ID: lnc-SCAMP5-1
Location (hg38): chr15:74899992-74900689
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 415 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000564692.1; CTD-2235H24.2-001; OTTHUMT00000420276.1; NONHSAT047278
Alternative gene names: ENSG00000260824.1; CTD-2235H24.2; OTTHUMG00000172727.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -171.3532 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCAMP5-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MPI-1:1
4.0 lnc-MPI-1:1
4.1 lnc-MPI-1:1
5.0 lnc-MPI-1:1
5.1 lnc-CCDC33-32:1
5.2 lnc-SCAMP5-1:2