Transcript: lnc-SCAMP1-2:4

Basic information

LNCipedia transcript ID: lnc-SCAMP1-2:4 
LNCipedia gene ID: lnc-SCAMP1-2
RefSeq ID: NR_105013
Location (hg38): chr5:77958247-77959096
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 300 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_105013; NR_105013.1
Alternative gene names: LOC101929154


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.7237 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCAMP1-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDE8B-2:4
4.0 lnc-PDE8B-2:4
4.1 lnc-PDE8B-2:4
5.0 lnc-PDE8B-2:4
5.1 lnc-BHMT2-22:4
5.2 lnc-SCAMP1-2:4