Transcript: lnc-SAYSD1-1:4

Basic information

LNCipedia transcript ID: lnc-SAYSD1-1:4 
LNCipedia gene ID: lnc-SAYSD1-1
RefSeq ID: NR_038401
Location (hg38): chr6:38906495-38953107
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2125 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT112336; NR_038401; NR_038401.1
Alternative gene names: LOC100131047


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.0472 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAYSD1-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAYSD1-1:4
4.0 lnc-SAYSD1-1:4
4.1 lnc-SAYSD1-1:4
5.0 lnc-SAYSD1-1:4
5.1 lnc-CPNE5-38:1
5.2 lnc-SAYSD1-1:4