Transcript: lnc-SAXO2-2:1

Basic information

LNCipedia transcript ID: lnc-SAXO2-2:1 
LNCipedia gene ID: lnc-SAXO2-2
Location (hg38): chr15:82097904-82102922
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4984 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT047767; FPKM1_group_10658_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.97 non-coding 
CPAT coding probability 5.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAXO2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-597K23.2.1-2:2
4.0 lnc-RP11-597K23.2.1-2:2
4.1 lnc-RP11-597K23.2.1-2:2
5.0 lnc-RP11-597K23.2.1-2:2
5.1 lnc-GOLGA6L9-9:1
5.2 lnc-SAXO2-2:1