Transcript: lnc-SAP30-11:1

Basic information

LNCipedia transcript ID: lnc-SAP30-11:1 
LNCipedia gene ID: lnc-SAP30-11
Location (hg38): chr4:173404781-173405020
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 240 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr4_8353_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -226.171 non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAP30-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAP30-11:1
4.0 lnc-SAP30-11:1
4.1 lnc-SAP30-11:1
5.0 lnc-SAP30-11:1
5.1 lnc-GALNTL6-11:1
5.2 lnc-SAP30-11:1