Transcript: lnc-SAMD3-1:4

Basic information

LNCipedia transcript ID: lnc-SAMD3-1:4 
LNCipedia gene ID: lnc-SAMD3-1
Ensembl Gene ID: ENSG00000227678
Ensembl Transcript ID: ENST00000622734
Location (hg38): chr6:130133566-130146179
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 908 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622734.1
Alternative gene names: ENSG00000227678.7; RP11-73O6.3; AL355581.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 594.714 coding 
CPAT coding probability 49.71% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SAMD3-1:4 no no no no

Available literature

  1. Cao (2016), Microarray profiling of bone marrow long non-coding RNA expression in Chinese pediatric acute myeloid leukemia patients., Oncol. Rep.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SAMD3-1:4
4.1 lnc-SAMD3-1:4
5.0 lnc-SAMD3-1:4
5.1 lnc-HDDC2-51:1
5.2 lnc-SAMD3-1:4